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Human Genome News Archive Edition

Human Genome News, January-June 1997; 8:(3-4)

ProDom Release 34.1

Release 34.1 of ProDom, the Protein Domain database, was constructed by clustering homologous segments derived from 65,376 nonfragmentary sequences present in SWISS-PROT 34 as of May 21. Some 18,086 multiple alignments and consensus sequences for homologous domain families are provided. The enhanced Web user interface links to and from PROSITE and PDB. Domain families can be searched by keyword, and graphical representations of domain arrangements facilitate structural interpretation of large protein families.

All multiple alignments have been recalculated ab initio using the MultAlin program, and a new expertise procedure validates some domain boundaries. A sensitive homology search procedure scans all domain sequences in ProDom and retrieves matches with only one sequence for each domain family, thus drastically reducing output redundancy. The most significant matches are visualized graphically to assist with interpretation. For long queries, the former less-sensitive but faster search on consensus sequences is also provided. Users may choose between the classical NCBI BLAST 1.4.9 and the new WU-BLAST 2.0a13, which allows for gapped output (http://blast.wustl.edu). [Jerome Gouzy and Daniel Kahn (Centre National de la Recherche Scientifique-Institut National de la Recherche Agronomique [INRA]) and Florence Corpet (INRA)]

To access Prodom:

Requests:

proquest@toulouse.inra.fr

MultAlin program:

http://prodes.toulouse.inra.fr/multalin/multalin.html



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Human Genome Program, U.S. Department of Energy, Human Genome News (v8n3).

Human Genome Project 1990–2003

The Human Genome Project (HGP) was an international 13-year effort, 1990 to 2003. Primary goals were to discover the complete set of human genes and make them accessible for further biological study, and determine the complete sequence of DNA bases in the human genome. See Timeline for more HGP history.

Human Genome News

Published from 1989 until 2002, this newsletter facilitated HGP communication, helped prevent duplication of research effort, and informed persons interested in genome research.